Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:103627950..103630144-chr8:103642209..103643784,2	MCF-7	breast:
2	chr8:103634398..103637775-chr8:103642367..103645250,3	K562	blood:
3	chr8:103643269..103645480-chr8:103797522..103801312,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253382	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2436928	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2436951	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2436952	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2436955	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2436956	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2436957	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2436958	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2436959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2436962	0.87[ASN][1000 genomes]
rs2436963	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2436964	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2436965	0.91[ASN][1000 genomes]
rs2436967	0.91[ASN][1000 genomes]
rs2436969	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2511656	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2511659	0.91[ASN][1000 genomes]
rs2511661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2511663	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2511666	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs66485119	0.91[ASN][1000 genomes]
rs873780	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
3	chr8:103640000-103646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:103640200-103645200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:103640600-103644600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:103640600-103646400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:103640800-103646600	Weak transcription	Fetal Stomach	stomach
8	chr8:103641200-103644400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:103641200-103644600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:103642400-103644400	Weak transcription	Placenta	Placenta
11	chr8:103643200-103643400	Weak transcription	Left Ventricle	heart

Quick Search: