Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1926738	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1926742	0.81[CEU][hapmap]
rs2148598	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2148599	0.83[ASN][1000 genomes]
rs2437261	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2437264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2437267	0.83[ASN][1000 genomes]
rs2437268	0.83[ASN][1000 genomes]
rs2437271	0.91[CEU][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2478571	0.81[EUR][1000 genomes]
rs2497757	0.86[AMR][1000 genomes]
rs2497759	0.87[AMR][1000 genomes]
rs2497765	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2497766	0.87[AMR][1000 genomes]
rs2497827	0.82[JPT][hapmap]
rs2497828	0.85[JPT][hapmap]
rs2497830	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2497835	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2497836	0.82[ASN][1000 genomes]
rs2497837	0.83[ASN][1000 genomes]
rs2497839	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2497840	0.91[CEU][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs692097	0.85[JPT][hapmap]
rs943331	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18266800-18276400	Weak transcription	Brain Substantia Nigra	brain
2	chr10:18271200-18273000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:18271200-18273000	Weak transcription	HSMMtube	muscle
4	chr10:18271400-18273000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:18271800-18273000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:18271800-18273000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18271800-18273000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:18272200-18273600	Enhancers	Hela-S3	cervix
9	chr10:18272400-18274000	Enhancers	GM12878-XiMat	blood
10	chr10:18272800-18273400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:18272800-18273400	Enhancers	HSMM	muscle
12	chr10:18272800-18273400	Enhancers	NHDF-Ad	bronchial
13	chr10:18272800-18273400	Enhancers	NHLF	lung
14	chr10:18272800-18273600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:18272800-18273600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:18272800-18273600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:18272800-18273600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr10:18272800-18273600	Enhancers	NHEK	skin
19	chr10:18272800-18273600	Enhancers	Osteobl	bone
20	chr10:18272800-18273800	Enhancers	NH-A	brain

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