Variant report

Variant	rs2437271
Chromosome Location	chr10:18276761-18276762
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1926738	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926742	0.81[CEU][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2148598	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2437261	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2437263	0.91[CEU][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2437264	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2478571	1.00[ASW][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.95[MKK][hapmap];0.80[TSI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2497757	0.80[AMR][1000 genomes]
rs2497759	0.81[AMR][1000 genomes]
rs2497762	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2497766	1.00[ASW][hapmap];0.91[MKK][hapmap]
rs2497830	1.00[ASW][hapmap];0.89[CHB][hapmap];0.81[MKK][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2497835	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2497839	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497840	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs475853	0.89[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs943331	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2437271	RDH13	trans	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18273400-18278400	Weak transcription	NHDF-Ad	bronchial
2	chr10:18273600-18278800	Weak transcription	NHEK	skin
3	chr10:18273600-18279000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:18273600-18279000	Weak transcription	Osteobl	bone
5	chr10:18273600-18282000	Weak transcription	Hela-S3	cervix
6	chr10:18273800-18278800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18276400-18277000	Weak transcription	NHLF	lung
8	chr10:18276400-18280200	Enhancers	GM12878-XiMat	blood
9	chr10:18276600-18277800	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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