Variant report

Variant	rs1926742
Chromosome Location	chr10:18295482-18295483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1926738	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2148598	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2437263	0.81[CEU][hapmap]
rs2437271	0.81[CEU][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2478571	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2497757	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2497759	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2497762	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2497765	0.92[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2497766	0.91[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2497830	0.89[AMR][1000 genomes]
rs2497839	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2497840	0.81[CEU][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs475853	0.85[JPT][hapmap]
rs943331	0.82[JPT][hapmap];0.88[AMR][1000 genomes]
rs943334	0.92[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18293600-18295600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:18294000-18295600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:18294200-18295600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:18294200-18295600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:18294200-18295600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:18294200-18295600	Enhancers	Fetal Stomach	stomach
7	chr10:18294200-18295600	Enhancers	NHLF	lung
8	chr10:18294200-18296000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:18294400-18295600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:18294400-18295600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:18294600-18295600	Enhancers	NHDF-Ad	bronchial
12	chr10:18294600-18296000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr10:18294800-18295600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:18294800-18295600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:18294800-18297000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:18295000-18295600	Enhancers	Ovary	ovary
17	chr10:18295000-18295800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr10:18295000-18295800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:18295000-18295800	Enhancers	Fetal Lung	lung
20	chr10:18295200-18295800	Enhancers	Fetal Muscle Leg	muscle
21	chr10:18295200-18296000	Enhancers	Hela-S3	cervix
22	chr10:18295200-18298400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:18295200-18299400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr10:18295400-18295600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr10:18295400-18295600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:18295400-18295800	Enhancers	Brain Substantia Nigra	brain
27	chr10:18295400-18298400	Weak transcription	NH-A	brain
28	chr10:18295400-18298400	Weak transcription	Osteobl	bone
29	chr10:18295400-18298800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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