Variant report

Variant	rs475853
Chromosome Location	chr10:18265076-18265077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1926738	0.88[ASN][1000 genomes]
rs1926740	0.86[JPT][hapmap]
rs1926742	0.85[JPT][hapmap]
rs2148598	0.89[ASN][1000 genomes]
rs2437271	0.89[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2478571	0.81[JPT][hapmap]
rs2497830	0.89[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2497839	0.89[ASN][1000 genomes]
rs2497840	0.89[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs943331	0.89[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links