Variant report

Variant	rs2440351
Chromosome Location	chr15:53150924-53150925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53146343..53148620-chr15:53150842..53152485,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16965204	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414184	0.92[EUR][1000 genomes]
rs2440360	0.93[EUR][1000 genomes]
rs2899501	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62023502	0.86[EUR][1000 genomes]
rs62023505	0.81[EUR][1000 genomes]
rs62023513	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161750	0.92[EUR][1000 genomes]
rs7169500	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8031605	0.95[EUR][1000 genomes]
rs8035241	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53148400-53151400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:53148600-53151000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:53148800-53151000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:53149200-53151400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:53149600-53151200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:53149600-53151600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:53149800-53151400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:53150000-53151000	Bivalent Enhancer	Brain Hippocampus Middle	brain
9	chr15:53150000-53151000	Flanking Active TSS	A549	lung
10	chr15:53150000-53151400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr15:53150200-53151000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
12	chr15:53150200-53151000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
13	chr15:53150200-53151200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr15:53150200-53151200	Enhancers	Brain Germinal Matrix	brain
15	chr15:53150200-53152400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:53150400-53151800	Enhancers	Fetal Heart	heart
17	chr15:53150600-53151200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:53150600-53151200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:53150600-53151200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr15:53150600-53151200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr15:53150600-53151600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:53150800-53151000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr15:53150800-53151000	Bivalent/Poised TSS	Fetal Brain Female	brain
24	chr15:53150800-53151000	Enhancers	Right Atrium	heart
25	chr15:53150800-53151200	Active TSS	Right Ventricle	heart
26	chr15:53150800-53151200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links