Variant report

Variant	rs8035241
Chromosome Location	chr15:53148332-53148333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16965204	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2414184	0.92[EUR][1000 genomes]
rs2440351	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2440360	0.93[EUR][1000 genomes]
rs2899501	0.93[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60669734	0.83[AFR][1000 genomes]
rs62023502	0.86[EUR][1000 genomes]
rs62023505	0.81[EUR][1000 genomes]
rs62023513	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7161750	0.92[EUR][1000 genomes]
rs7169500	0.88[EUR][1000 genomes]
rs73413419	0.86[ASN][1000 genomes]
rs8031605	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53147000-53149800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:53147400-53148600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:53147600-53148600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:53147600-53148800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:53147600-53148800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:53147600-53149200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:53147800-53148400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:53147800-53148800	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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