Variant report

Variant	rs62023513
Chromosome Location	chr15:53147614-53147615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16965204	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2414184	0.92[EUR][1000 genomes]
rs2440351	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2440360	0.93[EUR][1000 genomes]
rs2899501	0.93[EUR][1000 genomes]
rs62023502	0.86[EUR][1000 genomes]
rs62023505	0.81[EUR][1000 genomes]
rs7161750	0.92[EUR][1000 genomes]
rs7169500	0.88[EUR][1000 genomes]
rs73413419	0.95[ASN][1000 genomes]
rs8031605	0.95[EUR][1000 genomes]
rs8035241	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1538	chr15:53110785-53148080	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53147000-53149800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:53147400-53148600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:53147600-53147800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:53147600-53148600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:53147600-53148800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:53147600-53148800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:53147600-53149200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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