Variant report

Variant	rs2442884
Chromosome Location	chr10:26009630-26009631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2442872	0.84[ASN][1000 genomes]
rs2442873	0.84[ASN][1000 genomes]
rs2442877	0.81[ASN][1000 genomes]
rs2442878	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2442881	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2442882	0.84[ASN][1000 genomes]
rs2442885	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2442888	0.85[ASN][1000 genomes]
rs2442889	0.88[ASN][1000 genomes]
rs2504193	0.87[ASN][1000 genomes]
rs2504194	0.82[ASN][1000 genomes]
rs2504196	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2504197	0.84[ASN][1000 genomes]
rs2504202	0.84[ASN][1000 genomes]
rs2504203	0.84[ASN][1000 genomes]
rs2505444	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2923025	0.84[ASN][1000 genomes]
rs4749074	0.84[ASN][1000 genomes]
rs9417445	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3380301	chr10:26005549-26011700	Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26005400-26011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:26009400-26012000	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links