Variant report

Variant	rs2504202
Chromosome Location	chr10:26014870-26014871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26014509..26015495-chr10:26558628..26559344,3	MCF-7	breast:
2	chr10:25996810..25999179-chr10:26013583..26015505,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10828864	0.90[ASN][1000 genomes]
rs10828867	0.89[ASN][1000 genomes]
rs10828868	0.89[ASN][1000 genomes]
rs11014715	0.90[ASN][1000 genomes]
rs11014719	0.89[ASN][1000 genomes]
rs11813354	0.89[ASN][1000 genomes]
rs2254980	0.82[ASN][1000 genomes]
rs2367972	0.82[ASN][1000 genomes]
rs2367973	0.88[ASN][1000 genomes]
rs2442871	0.94[ASN][1000 genomes]
rs2442872	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442877	0.97[ASN][1000 genomes]
rs2442878	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442879	0.94[ASN][1000 genomes]
rs2442881	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442882	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442884	0.84[ASN][1000 genomes]
rs2442885	0.81[ASN][1000 genomes]
rs2442886	0.94[ASN][1000 genomes]
rs2442887	0.94[ASN][1000 genomes]
rs2504188	0.86[ASN][1000 genomes]
rs2504191	0.83[ASN][1000 genomes]
rs2504192	0.82[ASN][1000 genomes]
rs2504193	0.84[ASN][1000 genomes]
rs2504197	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2505423	0.92[ASN][1000 genomes]
rs2505426	0.93[ASN][1000 genomes]
rs2505444	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923029	0.82[ASN][1000 genomes]
rs4749072	0.89[ASN][1000 genomes]
rs4749074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60936155	0.84[ASN][1000 genomes]
rs9417445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26013000-26016200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:26013200-26015000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:26013200-26015000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:26013200-26016000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:26014800-26015000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:26014800-26015000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:26014800-26015000	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links