Variant report

Variant	rs2504192
Chromosome Location	chr10:26007962-26007963
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11014706	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014707	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014708	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11014709	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014710	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12781784	0.87[ASN][1000 genomes]
rs2254980	0.88[ASN][1000 genomes]
rs2367972	0.88[ASN][1000 genomes]
rs2367973	0.82[ASN][1000 genomes]
rs2442871	0.88[ASN][1000 genomes]
rs2442872	0.82[ASN][1000 genomes]
rs2442873	0.82[ASN][1000 genomes]
rs2442878	0.82[ASN][1000 genomes]
rs2442879	0.88[ASN][1000 genomes]
rs2442881	0.82[ASN][1000 genomes]
rs2442882	0.82[ASN][1000 genomes]
rs2442886	0.88[ASN][1000 genomes]
rs2442887	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2442893	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2442894	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2442895	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2442896	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2442897	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2442898	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2504188	0.80[ASN][1000 genomes]
rs2504190	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2504191	0.89[ASN][1000 genomes]
rs2504197	0.82[ASN][1000 genomes]
rs2504202	0.82[ASN][1000 genomes]
rs2504203	0.82[ASN][1000 genomes]
rs2505420	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2505421	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2505422	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2505423	0.85[ASN][1000 genomes]
rs2505426	0.86[ASN][1000 genomes]
rs2505444	0.82[ASN][1000 genomes]
rs2887128	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2923025	0.82[ASN][1000 genomes]
rs2923029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35830247	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4625357	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4749074	0.82[ASN][1000 genomes]
rs60936155	0.91[ASN][1000 genomes]
rs61846951	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9417445	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3380301	chr10:26005549-26011700	Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26005000-26009400	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr10:26005400-26011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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