Variant report

Variant	rs2442879
Chromosome Location	chr10:26010326-26010327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10828861	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828864	0.85[ASN][1000 genomes]
rs10828867	0.84[ASN][1000 genomes]
rs10828868	0.84[ASN][1000 genomes]
rs11014706	0.82[ASN][1000 genomes]
rs11014715	0.85[ASN][1000 genomes]
rs11014719	0.84[ASN][1000 genomes]
rs11813354	0.84[ASN][1000 genomes]
rs2367973	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2442871	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442872	0.94[ASN][1000 genomes]
rs2442873	0.94[ASN][1000 genomes]
rs2442877	0.91[ASN][1000 genomes]
rs2442878	0.94[ASN][1000 genomes]
rs2442881	0.94[ASN][1000 genomes]
rs2442882	0.94[ASN][1000 genomes]
rs2442886	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442887	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442888	0.82[ASN][1000 genomes]
rs2442889	0.84[ASN][1000 genomes]
rs2442893	0.83[ASN][1000 genomes]
rs2442894	0.83[ASN][1000 genomes]
rs2442897	0.82[ASN][1000 genomes]
rs2442898	0.82[ASN][1000 genomes]
rs2504188	0.92[ASN][1000 genomes]
rs2504190	0.82[ASN][1000 genomes]
rs2504192	0.88[ASN][1000 genomes]
rs2504193	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2504197	0.94[ASN][1000 genomes]
rs2504202	0.94[ASN][1000 genomes]
rs2504203	0.94[ASN][1000 genomes]
rs2505423	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2505426	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2505444	0.94[ASN][1000 genomes]
rs2887128	0.82[ASN][1000 genomes]
rs2923025	0.94[ASN][1000 genomes]
rs2923029	0.88[ASN][1000 genomes]
rs4625357	0.82[ASN][1000 genomes]
rs4749072	0.84[ASN][1000 genomes]
rs4749074	0.94[ASN][1000 genomes]
rs57262748	0.85[ASN][1000 genomes]
rs9417445	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3380301	chr10:26005549-26011700	Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26005400-26011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:26009400-26012000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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