Variant report
| Variant | rs60936155 |
|---|---|
| Chromosome Location | chr10:26006364-26006365 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs11014706 | 0.91[ASN][1000 genomes] |
| rs11014709 | 0.80[ASN][1000 genomes] |
| rs11014710 | 0.88[ASN][1000 genomes] |
| rs12781784 | 0.85[ASN][1000 genomes] |
| rs2254980 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2367972 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2442872 | 0.84[ASN][1000 genomes] |
| rs2442873 | 0.84[ASN][1000 genomes] |
| rs2442877 | 0.81[ASN][1000 genomes] |
| rs2442878 | 0.84[ASN][1000 genomes] |
| rs2442881 | 0.84[ASN][1000 genomes] |
| rs2442882 | 0.84[ASN][1000 genomes] |
| rs2442893 | 0.92[ASN][1000 genomes] |
| rs2442894 | 0.92[ASN][1000 genomes] |
| rs2442895 | 0.88[ASN][1000 genomes] |
| rs2442896 | 0.81[ASN][1000 genomes] |
| rs2442897 | 0.91[ASN][1000 genomes] |
| rs2442898 | 0.91[ASN][1000 genomes] |
| rs2504190 | 0.91[ASN][1000 genomes] |
| rs2504191 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2504192 | 0.91[ASN][1000 genomes] |
| rs2504197 | 0.84[ASN][1000 genomes] |
| rs2504202 | 0.84[ASN][1000 genomes] |
| rs2504203 | 0.84[ASN][1000 genomes] |
| rs2505421 | 0.86[ASN][1000 genomes] |
| rs2505422 | 0.85[ASN][1000 genomes] |
| rs2505423 | 0.81[ASN][1000 genomes] |
| rs2505426 | 0.81[ASN][1000 genomes] |
| rs2505444 | 0.84[ASN][1000 genomes] |
| rs2887128 | 0.91[ASN][1000 genomes] |
| rs2923025 | 0.84[ASN][1000 genomes] |
| rs2923029 | 0.91[ASN][1000 genomes] |
| rs35830247 | 0.87[ASN][1000 genomes] |
| rs4625357 | 0.91[ASN][1000 genomes] |
| rs4749074 | 0.84[ASN][1000 genomes] |
| rs61846951 | 0.80[ASN][1000 genomes] |
| rs9417445 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3380301 | chr10:26005549-26011700 | Enhancers Weak transcription Active TSS | lncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26005000-26009400 | Active TSS | HUES6 Cell Line | embryonic stem cell |
| 2 | chr10:26005400-26011800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
