Variant report

Variant	rs2451358
Chromosome Location	chr6:34025332-34025333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:34024964-34025334	K562	blood:	n/a	chr6:34025193-34025203 chr6:34025140-34025150 chr6:34025140-34025150 chr6:34025192-34025205 chr6:34025193-34025204 chr6:34025193-34025204 chr6:34025193-34025204 chr6:34025194-34025203 chr6:34025192-34025205 chr6:34025193-34025203

No.	Distal block	Cell Line	Cell type
1	chr6:34024217..34026361-chr6:34195874..34198495,2	K562	blood:
2	chr6:34022602..34024513-chr6:34024525..34027484,2	K562	blood:
3	chr6:34023728..34025864-chr6:34029998..34032056,2	MCF-7	breast:
4	chr6:34023393..34025806-chr6:34111046..34114201,3	MCF-7	breast:
5	chr6:34023974..34026204-chr6:34036920..34039187,2	MCF-7	breast:
6	chr6:34024875..34026613-chr6:34038654..34040465,2	K562	blood:
7	chr6:34024111..34026253-chr6:34067091..34069184,2	K562	blood:
8	chr6:34024186..34027778-chr6:34033635..34036854,3	K562	blood:
9	chr6:34023198..34025594-chr6:34206013..34207538,2	K562	blood:

Variant related genes	Relation type
GRM4	TF binding region
ENSG00000221779	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000124493	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12111392	0.92[EUR][1000 genomes]
rs12663035	0.80[EUR][1000 genomes]
rs12664932	0.80[EUR][1000 genomes]
rs1565365	0.80[EUR][1000 genomes]
rs1565366	0.80[EUR][1000 genomes]
rs1873250	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1873254	0.81[EUR][1000 genomes]
rs2229900	0.93[EUR][1000 genomes]
rs2395554	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2451381	0.81[EUR][1000 genomes]
rs2451382	0.84[EUR][1000 genomes]
rs2451383	0.84[EUR][1000 genomes]
rs2451384	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2451385	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2451386	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2451387	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2499672	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2499673	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2499674	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2499675	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2499676	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2499677	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3103432	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35075443	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35411382	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3734361	0.80[EUR][1000 genomes]
rs3798529	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713735	0.80[EUR][1000 genomes]
rs4713736	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6922166	0.80[EUR][1000 genomes]
rs71556962	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7775780	0.80[EUR][1000 genomes]
rs9366837	0.80[EUR][1000 genomes]
rs9394185	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9461949	0.80[EUR][1000 genomes]
rs9469690	0.80[EUR][1000 genomes]
rs9469691	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv462901	chr6:33953646-34050917	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv602861	chr6:33953646-34050917	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34002800-34027000	Weak transcription	Spleen	Spleen
2	chr6:34023600-34025400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr6:34024000-34036000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:34024600-34026600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:34024800-34027200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:34024800-34027400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:34025000-34025400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:34025000-34027000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:34025000-34036000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:34025000-34101800	Weak transcription	Right Atrium	heart
11	chr6:34025200-34025800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:34025200-34035800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:34025200-34036000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:34025200-34039600	Weak transcription	Gastric	stomach

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