Variant report

Variant	rs6922166
Chromosome Location	chr6:34020448-34020449
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34019855..34022701-chr6:34023287..34025862,2	MCF-7	breast:
2	chr6:34011747..34013677-chr6:34019752..34021828,2	K562	blood:
3	chr6:34019013..34021900-chr6:34130093..34133039,2	K562	blood:
4	chr6:33956434..33958467-chr6:34019469..34021333,2	K562	blood:
5	chr6:34020250..34021852-chr6:34117332..34118970,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124493	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12663035	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12664932	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1565365	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565366	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1873250	0.81[EUR][1000 genomes]
rs1873254	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2395554	0.82[EUR][1000 genomes]
rs2451358	0.80[EUR][1000 genomes]
rs3734361	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4711374	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4713735	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713736	0.82[EUR][1000 genomes]
rs7772059	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7775780	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9366836	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9366837	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368791	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9461949	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469690	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469691	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469693	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469694	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469697	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv462901	chr6:33953646-34050917	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv602861	chr6:33953646-34050917	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33984400-34023000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:34002800-34027000	Weak transcription	Spleen	Spleen
3	chr6:34013800-34020800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:34014200-34021200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:34016800-34024600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:34017400-34020800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:34017400-34021000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:34017600-34021000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:34017600-34021200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:34019000-34020800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:34019400-34021800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:34019800-34023200	Weak transcription	K562	blood
13	chr6:34020000-34021800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:34020200-34021600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:34020400-34023400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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