Variant report

Variant	rs3734361
Chromosome Location	chr6:34024165-34024166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:31)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:31 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:34023981-34024724	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr6:34023921-34024414	HCT-116	colon:	n/a	n/a
3	IRF1	chr6:34023968-34024381	K562	blood:	n/a	chr6:34024150-34024164 chr6:34024135-34024149
4	MAX	chr6:34024016-34024615	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAX	chr6:34024123-34024467	K562	blood:	n/a	n/a
6	TCF12	chr6:34024000-34024695	ECC-1	luminal epithelium:	n/a	n/a
7	NFIC	chr6:34024071-34024670	ECC-1	luminal epithelium:	n/a	n/a
8	TCF12	chr6:34024073-34024302	H1-hESC	embryonic stem cell:	n/a	n/a
9	CCNT2	chr6:34024152-34024395	K562	blood:	n/a	n/a
10	ETS1	chr6:34024148-34024463	K562	blood:	n/a	n/a
11	CBX3	chr6:34024124-34024511	K562	blood:	n/a	n/a
12	MXI1	chr6:34024109-34024509	IMR90	lung:	n/a	n/a
13	E2F6	chr6:34024049-34024646	H1-hESC	embryonic stem cell:	n/a	chr6:34024522-34024531
14	MAX	chr6:34023841-34024713	HCT-116	colon:	n/a	n/a
15	POLR2A	chr6:34024067-34024471	HCT-116	colon:	n/a	n/a
16	TCF12	chr6:34023911-34024712	ECC-1	luminal epithelium:	n/a	n/a
17	POLR2A	chr6:34024148-34024575	K562	blood:	n/a	n/a
18	MAZ	chr6:34023938-34024438	K562	blood:	n/a	n/a
19	HMGN3	chr6:34024125-34024370	K562	blood:	n/a	n/a
20	MAX	chr6:34024031-34024619	K562	blood:	n/a	n/a
21	MAX	chr6:34023948-34024714	ECC-1	luminal epithelium:	n/a	n/a
22	MAX	chr6:34024051-34024614	MCF-7	breast:	n/a	n/a
23	E2F6	chr6:34024115-34024522	K562	blood:	n/a	n/a
24	UBTF	chr6:34024150-34024475	K562	blood:	n/a	n/a
25	MAX	chr6:34024034-34024511	H1-hESC	embryonic stem cell:	n/a	n/a
26	MAX	chr6:34023874-34024699	MCF-7	breast:	n/a	n/a
27	POLR2A	chr6:34024048-34024483	H1-hESC	embryonic stem cell:	n/a	n/a
28	MYC	chr6:34024107-34024452	K562	blood:	n/a	n/a
29	MAX	chr6:34023958-34024609	K562	blood:	n/a	n/a
30	E2F6	chr6:34024141-34024515	H1-hESC	embryonic stem cell:	n/a	n/a
31	E2F6	chr6:34024096-34024521	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34023728..34025864-chr6:34029998..34032056,2	MCF-7	breast:
2	chr6:34023393..34025806-chr6:34111046..34114201,3	MCF-7	breast:
3	chr6:34023974..34026204-chr6:34036920..34039187,2	MCF-7	breast:
4	chr6:34024111..34026253-chr6:34067091..34069184,2	K562	blood:
5	chr6:34023198..34025594-chr6:34206013..34207538,2	K562	blood:

No data

Variant related genes	Relation type
GRM4	TF binding region
ENSG00000221779	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000124493	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12663035	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12664932	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1565365	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1565366	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1873250	0.81[EUR][1000 genomes]
rs1873254	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395554	0.82[EUR][1000 genomes]
rs2451358	0.80[EUR][1000 genomes]
rs4711374	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713735	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713736	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6922166	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772059	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7775780	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9366836	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9366837	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9368791	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9461949	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469690	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469691	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469693	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469694	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469697	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv462901	chr6:33953646-34050917	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv602861	chr6:33953646-34050917	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34002800-34027000	Weak transcription	Spleen	Spleen
2	chr6:34016800-34024600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:34020800-34025200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:34021000-34024200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:34021000-34025200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:34022400-34024800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:34023000-34025000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:34023000-34025000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:34023000-34025200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:34023200-34024200	Bivalent Enhancer	Fetal Stomach	stomach
11	chr6:34023200-34024200	Weak transcription	Gastric	stomach
12	chr6:34023200-34025000	Enhancers	Placenta	Placenta
13	chr6:34023400-34024200	Weak transcription	Esophagus	oesophagus
14	chr6:34023400-34024200	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr6:34023400-34024400	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr6:34023400-34024600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:34023400-34024800	Flanking Active TSS	K562	blood
18	chr6:34023400-34025200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:34023600-34025400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr6:34023800-34024600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:34023800-34025000	Enhancers	Fetal Kidney	kidney
22	chr6:34023800-34025000	Enhancers	NHDF-Ad	bronchial
23	chr6:34024000-34024200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:34024000-34024400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:34024000-34024400	Enhancers	Stomach Mucosa	stomach
26	chr6:34024000-34024400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
27	chr6:34024000-34024600	Flanking Active TSS	Ovary	ovary
28	chr6:34024000-34024800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:34024000-34024800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:34024000-34036000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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