Variant report

Variant	rs2455403
Chromosome Location	chr5:60939890-60939891
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2441134	0.88[CEU][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2441136	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2463066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs253486	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2937840	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36034	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs379212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs40345	0.88[CEU][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs430637	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60934800-60940000	Weak transcription	Pancreas	Pancrea
3	chr5:60937400-60941000	Weak transcription	Hela-S3	cervix
4	chr5:60937600-60945400	Weak transcription	Brain Angular Gyrus	brain
5	chr5:60938000-60940200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:60938400-60945400	Weak transcription	Brain Anterior Caudate	brain
7	chr5:60938400-60945400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:60939200-60941400	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:60939600-60940000	Enhancers	NHEK	skin
10	chr5:60939600-60941600	Strong transcription	Brain Substantia Nigra	brain
11	chr5:60939800-60941000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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