Variant report

Variant	rs253486
Chromosome Location	chr5:60944461-60944462
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2441134	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2441136	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2455403	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2463066	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2937840	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36034	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs379212	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40345	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs430637	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60937600-60945400	Weak transcription	Brain Angular Gyrus	brain
3	chr5:60938400-60945400	Weak transcription	Brain Anterior Caudate	brain
4	chr5:60938400-60945400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:60941600-60945600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:60941600-60945600	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:60942800-60948600	Enhancers	Adipose Nuclei	Adipose
8	chr5:60944400-60945600	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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