Variant report

Variant	rs36034
Chromosome Location	chr5:60962098-60962099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60960558..60962945-chr5:60966490..60968029,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11743540	0.92[CHB][hapmap]
rs1393174	0.84[CHB][hapmap]
rs153384	1.00[LWK][hapmap]
rs1580860	0.84[CHB][hapmap]
rs2441134	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441136	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2455403	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2463066	1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs253486	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2937830	0.84[CHB][hapmap]
rs2937840	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs377667	0.84[CHB][hapmap];1.00[LWK][hapmap]
rs379212	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs381182	0.84[CHB][hapmap];1.00[LWK][hapmap]
rs39695	1.00[ASW][hapmap];0.84[CHB][hapmap];1.00[LWK][hapmap];0.81[EUR][1000 genomes]
rs40345	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs409465	0.84[CHB][hapmap]
rs430637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs432733	0.82[MEX][hapmap]
rs4700426	0.84[CHB][hapmap]
rs6882777	0.84[CHB][hapmap]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60953600-60963000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:60955200-60974400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:60956400-60963000	Weak transcription	Fetal Intestine Small	intestine
4	chr5:60960800-60965400	Weak transcription	Ovary	ovary
5	chr5:60961400-60962600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:60961600-60962200	Enhancers	Left Ventricle	heart
7	chr5:60961600-60962400	Enhancers	K562	blood
8	chr5:60961600-60962600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:60961600-60962600	Enhancers	Lung	lung
10	chr5:60961800-60962200	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr5:60961800-60962200	Enhancers	Fetal Muscle Leg	muscle
12	chr5:60961800-60962400	Enhancers	Right Atrium	heart
13	chr5:60961800-60962600	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr5:60961800-60962600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr5:60961800-60962600	Enhancers	HSMMtube	muscle
16	chr5:60961800-60962600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr5:60962000-60962200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
18	chr5:60962000-60962200	Flanking Active TSS	Brain Angular Gyrus	brain
19	chr5:60962000-60962400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
20	chr5:60962000-60962400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr5:60962000-60962400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:60962000-60962400	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr5:60962000-60962400	Flanking Active TSS	Liver	Liver
24	chr5:60962000-60962400	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr5:60962000-60962400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
26	chr5:60962000-60962400	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr5:60962000-60962400	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr5:60962000-60962400	Enhancers	Pancreas	Pancrea
29	chr5:60962000-60962400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr5:60962000-60962400	Enhancers	Rectal Smooth Muscle	rectum
31	chr5:60962000-60962400	Flanking Active TSS	GM12878-XiMat	blood
32	chr5:60962000-60962600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:60962000-60962600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr5:60962000-60962800	Enhancers	Spleen	Spleen
35	chr5:60962000-60965600	Enhancers	Brain Cingulate Gyrus	brain

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