Variant report

Variant	rs6882777
Chromosome Location	chr5:60983430-60983431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11743540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13188780	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393174	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580860	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs16893660	0.91[YRI][hapmap]
rs16893883	0.86[YRI][hapmap]
rs2441134	0.84[CHB][hapmap]
rs253531	0.81[GIH][hapmap]
rs2937830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937832	0.89[CEU][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2950221	0.82[CEU][hapmap]
rs36034	0.84[CHB][hapmap]
rs377667	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs381182	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs39695	1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs402996	0.99[ASN][1000 genomes]
rs40345	0.84[CHB][hapmap]
rs409465	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs430637	0.84[CHB][hapmap]
rs432733	0.92[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4700426	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56878249	0.95[ASN][1000 genomes]
rs6880870	0.82[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6882777	PPWD1	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60981000-60983800	Enhancers	Brain Anterior Caudate	brain
2	chr5:60981800-60984000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:60981800-60984000	Enhancers	HMEC	breast
4	chr5:60982000-60984000	Enhancers	HSMMtube	muscle
5	chr5:60982400-60983600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:60982400-60983600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr5:60982400-60984000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:60982400-60984200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr5:60982400-60987800	Weak transcription	Brain Substantia Nigra	brain
10	chr5:60982800-60983800	Enhancers	HSMM	muscle
11	chr5:60983000-60983600	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:60983200-60983600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:60983400-60984000	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr5:60983400-60985800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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