Variant report

Variant	rs56878249
Chromosome Location	chr5:60979819-60979820
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11743540	0.95[ASN][1000 genomes]
rs13188780	0.95[ASN][1000 genomes]
rs1393174	0.95[ASN][1000 genomes]
rs153377	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs153384	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs153428	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1580860	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs253180	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2937830	0.95[ASN][1000 genomes]
rs377667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs381182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs39695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs402996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs409465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs432733	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4700426	0.95[ASN][1000 genomes]
rs6882777	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv328610	chr5:60979808-60979819	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60972400-60980400	Weak transcription	Brain Hippocampus Middle	brain
2	chr5:60975600-60982400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:60976400-60981000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:60976600-60982200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr5:60979200-60981000	Weak transcription	Brain Anterior Caudate	brain
6	chr5:60979200-60983400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:60979400-60980400	Weak transcription	Brain Substantia Nigra	brain
8	chr5:60979600-60982800	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links