Variant report

Variant	rs13188780
Chromosome Location	chr5:60983027-60983028
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11743540	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393174	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580860	0.99[ASN][1000 genomes]
rs2937830	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2937832	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs377667	0.99[ASN][1000 genomes]
rs381182	0.99[ASN][1000 genomes]
rs39695	0.93[ASN][1000 genomes]
rs402996	0.99[ASN][1000 genomes]
rs409465	0.99[ASN][1000 genomes]
rs432733	0.84[ASN][1000 genomes]
rs4700426	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56878249	0.95[ASN][1000 genomes]
rs6882777	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60979200-60983400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:60981000-60983800	Enhancers	Brain Anterior Caudate	brain
3	chr5:60981800-60984000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:60981800-60984000	Enhancers	HMEC	breast
5	chr5:60982000-60984000	Enhancers	HSMMtube	muscle
6	chr5:60982400-60983600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:60982400-60983600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:60982400-60984000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:60982400-60984200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr5:60982400-60987800	Weak transcription	Brain Substantia Nigra	brain
11	chr5:60982600-60983400	Enhancers	Fetal Lung	lung
12	chr5:60982800-60983200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
13	chr5:60982800-60983800	Enhancers	HSMM	muscle
14	chr5:60983000-60983400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:60983000-60983600	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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