Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:60994812-60994899	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000248529	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11743540	0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12518552	0.89[CEU][hapmap]
rs13188780	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1393174	0.89[CEU][hapmap];0.92[GIH][hapmap];0.85[MEX][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs153377	0.94[JPT][hapmap]
rs153378	0.94[JPT][hapmap]
rs153380	0.93[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs153384	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs153429	0.81[YRI][hapmap]
rs253180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs253532	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs253533	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2937830	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2950221	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs432733	0.89[JPT][hapmap]
rs436696	0.83[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4700426	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6880870	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs6882777	0.89[CEU][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs860648	0.80[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2937832	PPWD1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60993800-60995400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:60994400-60997400	Weak transcription	Adipose Nuclei	Adipose
3	chr5:60994400-61002400	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:60994800-60997400	Weak transcription	Lung	lung
5	chr5:60994800-60999400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:60994800-61002600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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