Variant report

Variant	rs253532
Chromosome Location	chr5:60997490-60997491
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11743540	0.81[JPT][hapmap]
rs149080	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs153375	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs153377	0.87[CEU][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs153378	1.00[CEU][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs153384	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs153428	0.81[ASN][1000 genomes]
rs1580860	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs166142	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs253180	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs253535	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2937832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs377667	0.87[CEU][hapmap]
rs381182	0.87[CEU][hapmap]
rs39695	0.87[CEU][hapmap]
rs409465	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs432733	0.89[JPT][hapmap]
rs4700426	0.81[JPT][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60994400-61002400	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:60994800-60999400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:60994800-61002600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:60995400-60998000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:60997000-60998200	Enhancers	Brain Anterior Caudate	brain
6	chr5:60997000-60999000	Enhancers	Brain Germinal Matrix	brain
7	chr5:60997200-60997800	Enhancers	Brain Angular Gyrus	brain
8	chr5:60997200-60997800	Enhancers	Brain Substantia Nigra	brain
9	chr5:60997200-60998000	Enhancers	Brain Hippocampus Middle	brain
10	chr5:60997400-60997600	Enhancers	Lung	lung
11	chr5:60997400-60997800	Enhancers	Brain Cingulate Gyrus	brain
12	chr5:60997400-60997800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:60997400-60998400	Enhancers	HSMMtube	muscle
14	chr5:60997400-60998800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:60997400-60998800	Enhancers	Adipose Nuclei	Adipose
16	chr5:60997400-60999000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:60997400-60999000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr5:60997400-60999200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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