Variant report

Variant	rs253535
Chromosome Location	chr5:60998978-60998979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs149080	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs153375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs153378	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs166142	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs253532	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60994400-61002400	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:60994800-60999400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:60994800-61002600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:60997000-60999000	Enhancers	Brain Germinal Matrix	brain
5	chr5:60997400-60999000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:60997400-60999000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:60997400-60999200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:60997600-60999000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:60997800-61001800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr5:60997800-61015200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:60998000-60999000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:60998000-61003600	Weak transcription	Brain Hippocampus Middle	brain
13	chr5:60998200-61002600	Weak transcription	Brain Anterior Caudate	brain
14	chr5:60998400-61000000	Enhancers	GM12878-XiMat	blood
15	chr5:60998400-61002600	Weak transcription	Brain Substantia Nigra	brain
16	chr5:60998800-60999800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:60998800-61002600	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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