Variant report

Variant	rs153428
Chromosome Location	chr5:61012342-61012343
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1466011	0.92[ASN][1000 genomes]
rs1466012	0.92[ASN][1000 genomes]
rs149080	1.00[ASN][1000 genomes]
rs149127	0.92[ASN][1000 genomes]
rs149328	0.92[ASN][1000 genomes]
rs153375	1.00[ASN][1000 genomes]
rs153377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153378	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs153381	0.92[ASN][1000 genomes]
rs153382	0.92[ASN][1000 genomes]
rs153384	1.00[CEU][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1580860	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs166142	1.00[ASN][1000 genomes]
rs253180	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs253532	0.87[CEU][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2937832	0.94[JPT][hapmap]
rs2937834	0.86[ASN][1000 genomes]
rs2937835	0.86[ASN][1000 genomes]
rs2974454	0.85[ASN][1000 genomes]
rs377667	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs381182	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs39695	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs402996	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs409465	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs432733	0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56878249	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60997800-61015200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:61012000-61013200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:61012000-61013200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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