Variant report

Variant	rs153381
Chromosome Location	chr5:61023981-61023982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1466011	1.00[ASN][1000 genomes]
rs1466012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149080	0.92[ASN][1000 genomes]
rs149127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153375	0.92[ASN][1000 genomes]
rs153377	0.93[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs153378	0.92[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs153382	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153384	0.88[JPT][hapmap]
rs153428	0.92[ASN][1000 genomes]
rs166142	0.92[ASN][1000 genomes]
rs2030889	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs253180	0.89[JPT][hapmap]
rs253532	0.89[JPT][hapmap]
rs2937832	0.88[JPT][hapmap]
rs2937834	0.94[ASN][1000 genomes]
rs2937835	0.94[ASN][1000 genomes]
rs2974454	0.92[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61022800-61027000	Weak transcription	Brain Angular Gyrus	brain
2	chr5:61023200-61028800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:61023800-61024000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:61023800-61024400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:61023800-61024800	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links