Variant report

Variant	rs1466011
Chromosome Location	chr5:61022652-61022653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1466012	1.00[ASN][1000 genomes]
rs149080	0.92[ASN][1000 genomes]
rs149127	1.00[ASN][1000 genomes]
rs149328	1.00[ASN][1000 genomes]
rs153375	0.92[ASN][1000 genomes]
rs153377	0.92[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs153378	0.92[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.92[ASN][1000 genomes]
rs153381	1.00[ASN][1000 genomes]
rs153382	1.00[ASN][1000 genomes]
rs153384	0.88[JPT][hapmap]
rs153428	0.92[ASN][1000 genomes]
rs166142	0.92[ASN][1000 genomes]
rs253180	0.88[JPT][hapmap]
rs253532	0.88[JPT][hapmap]
rs2937832	0.88[JPT][hapmap]
rs2937834	0.94[ASN][1000 genomes]
rs2937835	0.94[ASN][1000 genomes]
rs2974454	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1466011	PDE4D	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61022400-61022800	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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