Variant report

Variant	rs2459467
Chromosome Location	chr5:40928792-40928793
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10067114	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10071209	0.94[ASN][1000 genomes]
rs10472345	0.86[ASN][1000 genomes]
rs1063499	0.92[EUR][1000 genomes]
rs1376178	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1376180	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1376181	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1450656	0.82[EUR][1000 genomes]
rs1450657	0.82[EUR][1000 genomes]
rs1697938	0.83[ASN][1000 genomes]
rs1901165	0.82[EUR][1000 genomes]
rs1901166	0.92[EUR][1000 genomes]
rs2122569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250856	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2443035	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2443040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455301	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2455302	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2455309	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2455311	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2455312	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2455314	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2459463	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2459464	0.82[EUR][1000 genomes]
rs2459465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2597738	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2597739	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2597746	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs324063	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs324066	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs324067	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324068	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324072	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35642126	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs364443	0.84[ASN][1000 genomes]
rs420220	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs438652	0.84[ASN][1000 genomes]
rs6861054	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6876739	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6887212	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6895963	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs837383	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881467	chr5:40869802-41008650	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757114	chr5:40874078-41009282	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759341	chr5:40874078-41009282	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv823055	chr5:40875708-41004839	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv35077	chr5:40875843-41000671	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2459467	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40918000-40930800	Weak transcription	Fetal Heart	heart
2	chr5:40925200-40929200	Weak transcription	Ovary	ovary
3	chr5:40925800-40930600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:40926600-40936600	Weak transcription	Left Ventricle	heart
5	chr5:40928000-40931200	Strong transcription	Fetal Lung	lung

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