Variant report

Variant	rs438652
Chromosome Location	chr5:40859998-40859999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:40826490..40828948-chr5:40858944..40860973,4	K562	blood:
2	chr5:40857647..40860536-chr5:40876647..40878892,2	K562	blood:
3	chr5:40828188..40830932-chr5:40857646..40860202,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10067114	0.85[ASN][1000 genomes]
rs10071209	0.85[ASN][1000 genomes]
rs10472345	0.82[ASN][1000 genomes]
rs13156109	0.83[YRI][hapmap]
rs1376178	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1697938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1910016	0.84[YRI][hapmap]
rs2122569	0.80[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2443035	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2443040	0.84[ASN][1000 genomes]
rs2459465	0.80[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2459467	0.84[ASN][1000 genomes]
rs2597746	0.95[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs323565	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs324063	0.85[ASN][1000 genomes]
rs324066	0.85[ASN][1000 genomes]
rs324067	0.84[ASN][1000 genomes]
rs324068	0.84[ASN][1000 genomes]
rs324072	0.83[ASN][1000 genomes]
rs364443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420220	0.90[ASN][1000 genomes]
rs441073	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6861054	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6887212	0.90[ASN][1000 genomes]
rs837383	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs837388	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880438	chr5:40753877-40900717	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	160 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40852800-40865200	Weak transcription	Pancreas	Pancrea
2	chr5:40854600-40862600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:40856200-40871400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:40856400-40860200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:40858600-40863200	Weak transcription	Right Atrium	heart

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