Variant report

Variant	rs2461829
Chromosome Location	chr3:119492699-119492700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10511394	0.86[ASN][1000 genomes]
rs10934498	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1129708	0.87[ASN][1000 genomes]
rs11926554	0.92[ASN][1000 genomes]
rs12488820	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13072420	0.83[ASN][1000 genomes]
rs13086843	0.82[ASN][1000 genomes]
rs13089523	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1464599	0.83[ASN][1000 genomes]
rs1523127	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1523130	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1581451	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1608330	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1608332	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2276706	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2461830	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2472664	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2472674	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28424110	0.83[ASN][1000 genomes]
rs34255376	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34333922	0.82[ASN][1000 genomes]
rs34490729	0.83[ASN][1000 genomes]
rs34787921	0.88[ASN][1000 genomes]
rs34948068	0.82[ASN][1000 genomes]
rs35017263	0.85[ASN][1000 genomes]
rs35246961	0.83[ASN][1000 genomes]
rs35576079	0.82[ASN][1000 genomes]
rs35576922	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3814055	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4566573	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4687882	0.85[ASN][1000 genomes]
rs4688033	0.80[ASN][1000 genomes]
rs60639590	0.83[ASN][1000 genomes]
rs66840889	0.86[ASN][1000 genomes]
rs6770006	0.85[ASN][1000 genomes]
rs7642839	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7643038	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9289134	0.83[ASN][1000 genomes]
rs9682652	0.85[ASN][1000 genomes]
rs9815093	0.85[ASN][1000 genomes]
rs9817024	0.88[ASN][1000 genomes]
rs9821892	0.88[ASN][1000 genomes]
rs9832958	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9865270	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119474400-119493400	Weak transcription	Ovary	ovary
2	chr3:119488600-119495400	Weak transcription	HSMM	muscle

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