Variant report

Variant	rs34255376
Chromosome Location	chr3:119502048-119502049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119498195..119499776-chr3:119500089..119502545,2	K562	blood:
2	chr3:119498195..119499801-chr3:119500089..119502246,2	K562	blood:
3	chr3:119501588..119503583-chr3:119503958..119505707,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144852	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10934498	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1129708	0.81[ASN][1000 genomes]
rs11926554	0.99[ASN][1000 genomes]
rs12488820	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089523	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1523127	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523130	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1581451	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1608330	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1608332	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2276706	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2461829	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2461830	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2472664	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2472674	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34787921	0.82[ASN][1000 genomes]
rs35576922	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814055	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4566573	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7642839	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7643038	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9817024	0.82[ASN][1000 genomes]
rs9821892	0.82[ASN][1000 genomes]
rs9832958	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9865270	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119497800-119503000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:119499600-119502800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:119500000-119503200	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr3:119500200-119514400	Weak transcription	Small Intestine	intestine
5	chr3:119500400-119502400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:119500600-119502400	Active TSS	Colonic Mucosa	Colon
7	chr3:119500600-119502800	Active TSS	Fetal Intestine Small	intestine
8	chr3:119500600-119503400	Active TSS	Liver	Liver
9	chr3:119500600-119504000	Active TSS	Fetal Intestine Large	intestine
10	chr3:119500600-119504400	Active TSS	Duodenum Mucosa	Duodenum
11	chr3:119501000-119502400	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr3:119501600-119503000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:119501800-119502800	Enhancers	K562	blood
14	chr3:119501800-119503000	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr3:119501800-119503000	Enhancers	Stomach Mucosa	stomach
16	chr3:119501800-119503000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr3:119501800-119515000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:119502000-119502400	Enhancers	HSMMtube	muscle
19	chr3:119502000-119505800	Enhancers	HepG2	liver

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