Variant report

Variant	rs2472674
Chromosome Location	chr3:119507089-119507090
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119506500..119508290-chr3:119519426..119521149,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10934498	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11926554	0.96[ASN][1000 genomes]
rs12488820	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13089523	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1403527	0.80[AFR][1000 genomes]
rs1523127	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1523130	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1581451	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1608330	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1608332	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2056530	0.80[AFR][1000 genomes]
rs2276706	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2461829	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2461830	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2472664	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2873951	0.80[AFR][1000 genomes]
rs34255376	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34787921	0.80[ASN][1000 genomes]
rs35576922	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814055	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4234666	0.80[AFR][1000 genomes]
rs4566573	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7642839	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7643038	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9817024	0.80[ASN][1000 genomes]
rs9821892	0.80[ASN][1000 genomes]
rs9832958	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9865270	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119500200-119514400	Weak transcription	Small Intestine	intestine
2	chr3:119501800-119515000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:119503000-119507200	Weak transcription	Stomach Mucosa	stomach
4	chr3:119503200-119513400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:119505200-119510600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:119505200-119511000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:119505800-119507400	Weak transcription	Fetal Intestine Small	intestine
8	chr3:119505800-119512000	Weak transcription	HepG2	liver
9	chr3:119506200-119507400	Genic enhancers	Fetal Intestine Large	intestine
10	chr3:119506400-119510800	Enhancers	Liver	Liver

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