Variant report

Variant	rs2461831
Chromosome Location	chr3:119501798-119501799
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119498195..119499776-chr3:119500089..119502545,2	K562	blood:
2	chr3:119498195..119499801-chr3:119500089..119502246,2	K562	blood:
3	chr3:119501588..119503583-chr3:119503958..119505707,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144852	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13325281	1.00[AMR][1000 genomes]
rs17183897	1.00[AMR][1000 genomes]
rs1920543	1.00[AMR][1000 genomes]
rs2472661	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7649166	1.00[AMR][1000 genomes]
rs9832865	1.00[AMR][1000 genomes]
rs9838456	1.00[AMR][1000 genomes]
rs9844770	1.00[AMR][1000 genomes]
rs9875981	1.00[AMR][1000 genomes]
rs9879782	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119497800-119503000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:119499200-119501800	Weak transcription	K562	blood
3	chr3:119499200-119502000	Weak transcription	HSMMtube	muscle
4	chr3:119499600-119501800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr3:119499600-119502800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:119500000-119503200	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr3:119500200-119514400	Weak transcription	Small Intestine	intestine
8	chr3:119500400-119502400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:119500600-119502400	Active TSS	Colonic Mucosa	Colon
10	chr3:119500600-119502800	Active TSS	Fetal Intestine Small	intestine
11	chr3:119500600-119503400	Active TSS	Liver	Liver
12	chr3:119500600-119504000	Active TSS	Fetal Intestine Large	intestine
13	chr3:119500600-119504400	Active TSS	Duodenum Mucosa	Duodenum
14	chr3:119501000-119501800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr3:119501000-119501800	Flanking Active TSS	Stomach Mucosa	stomach
16	chr3:119501000-119502000	Active TSS	Rectal Smooth Muscle	rectum
17	chr3:119501000-119502400	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr3:119501200-119502000	Enhancers	HSMM	muscle
19	chr3:119501400-119501800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr3:119501400-119501800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr3:119501600-119502000	Flanking Active TSS	HepG2	liver
22	chr3:119501600-119503000	Enhancers	Primary monocytes fromperipheralblood	blood

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