Variant report

Variant	rs17183897
Chromosome Location	chr3:119582291-119582292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119538043..119540363-chr3:119581345..119583946,2	K562	blood:
2	chr3:119581923..119584726-chr3:119588066..119590624,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13325281	1.00[AMR][1000 genomes]
rs1920543	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2461831	1.00[AMR][1000 genomes]
rs2472661	1.00[AMR][1000 genomes]
rs28812563	1.00[AMR][1000 genomes]
rs7649166	1.00[AMR][1000 genomes]
rs9832865	1.00[AMR][1000 genomes]
rs9838456	1.00[AMR][1000 genomes]
rs9844770	1.00[AMR][1000 genomes]
rs9866536	1.00[AMR][1000 genomes]
rs9875981	1.00[AMR][1000 genomes]
rs9876369	1.00[AMR][1000 genomes]
rs9879782	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv829696	chr3:119567659-119711405	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
6	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119541200-119587000	Weak transcription	Gastric	stomach
2	chr3:119545200-119583400	Weak transcription	Brain Angular Gyrus	brain
3	chr3:119546000-119663400	Weak transcription	Lung	lung
4	chr3:119551400-119594600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:119561200-119591200	Weak transcription	Stomach Mucosa	stomach
6	chr3:119562400-119611000	Weak transcription	Fetal Stomach	stomach
7	chr3:119566800-119586000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:119567000-119605200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:119569400-119629400	Weak transcription	Esophagus	oesophagus
10	chr3:119574600-119631600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:119574800-119583000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:119575000-119583000	Strong transcription	Fetal Thymus	thymus
13	chr3:119575000-119583400	Weak transcription	Pancreas	Pancrea
14	chr3:119575000-119583800	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr3:119575000-119583800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr3:119575000-119585400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:119575000-119585800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr3:119575000-119586800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:119575000-119588000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:119575400-119583800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:119575600-119584200	Strong transcription	Primary T cells from cord blood	blood
22	chr3:119576600-119582400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:119576600-119584000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:119577000-119598800	Weak transcription	Fetal Brain Male	brain
25	chr3:119577400-119585200	Strong transcription	Primary B cells from cord blood	blood
26	chr3:119577400-119585200	Strong transcription	HSMM	muscle
27	chr3:119577400-119596600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:119577600-119582600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr3:119577600-119583000	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:119577600-119585400	Weak transcription	K562	blood
31	chr3:119577600-119589400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:119577600-119598200	Weak transcription	Left Ventricle	heart
33	chr3:119577600-119602800	Weak transcription	Psoas Muscle	Psoas
34	chr3:119577600-119607600	Weak transcription	Aorta	Aorta
35	chr3:119577800-119582600	Strong transcription	Primary hematopoietic stem cells	blood
36	chr3:119577800-119583800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr3:119577800-119607600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:119578000-119585600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:119578000-119601400	Weak transcription	Fetal Intestine Small	intestine
40	chr3:119578200-119583600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:119578800-119582400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:119578800-119584000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:119579400-119587000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:119579400-119587000	Strong transcription	Dnd41	blood
45	chr3:119579600-119582600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:119580200-119582800	Strong transcription	Fetal Intestine Large	intestine
47	chr3:119580400-119582400	Strong transcription	Fetal Lung	lung
48	chr3:119580400-119582400	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr3:119580400-119582600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:119580400-119582600	Strong transcription	Fetal Muscle Trunk	muscle

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