Variant report

Variant	rs2462422
Chromosome Location	chr11:106886156-106886157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2253090	0.94[ASN][1000 genomes]
rs2462424	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2465782	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2513114	0.94[ASN][1000 genomes]
rs3100765	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3133356	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106861600-106886200	Weak transcription	Fetal Brain Male	brain
2	chr11:106883800-106886200	Weak transcription	A549	lung
3	chr11:106885400-106886200	Enhancers	NH-A	brain
4	chr11:106885400-106886400	Enhancers	Fetal Lung	lung
5	chr11:106885400-106886800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:106885400-106887400	Active TSS	Fetal Brain Female	brain
7	chr11:106885400-106887800	Enhancers	Fetal Heart	heart
8	chr11:106885600-106886800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:106885600-106887800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:106885800-106886800	Active TSS	Brain Germinal Matrix	brain
11	chr11:106885800-106890000	Active TSS	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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