Variant report

Variant	rs2465782
Chromosome Location	chr11:106869646-106869647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11211991	0.81[ASN][1000 genomes]
rs1455600	0.93[ASN][1000 genomes]
rs1982496	0.94[ASN][1000 genomes]
rs2253090	0.82[CHD][hapmap]
rs2462422	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2465780	0.86[EUR][1000 genomes]
rs2510595	0.90[EUR][1000 genomes]
rs2510596	0.94[ASN][1000 genomes]
rs2510599	0.93[ASN][1000 genomes]
rs2513109	0.93[ASN][1000 genomes]
rs2513142	0.95[ASN][1000 genomes]
rs3100765	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66521669	0.93[ASN][1000 genomes]
rs7109634	0.81[ASN][1000 genomes]
rs7127697	0.93[ASN][1000 genomes]
rs7938459	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2465782	MMP10	cis	cerebellum	SCAN
rs2465782	CARD17	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106861600-106886200	Weak transcription	Fetal Brain Male	brain
2	chr11:106866800-106870600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:106867400-106870000	Enhancers	NHDF-Ad	bronchial
4	chr11:106868600-106870200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:106869000-106885400	Weak transcription	Fetal Lung	lung
6	chr11:106869200-106870000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr11:106869400-106869800	Enhancers	Fetal Muscle Leg	muscle
8	chr11:106869400-106874600	Weak transcription	Fetal Heart	heart
9	chr11:106869600-106869800	Enhancers	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links