Variant report

Variant	rs2513142
Chromosome Location	chr11:106863368-106863369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11211986	0.84[EUR][1000 genomes]
rs11211988	0.83[ASN][1000 genomes]
rs11211991	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1455600	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17574208	0.84[EUR][1000 genomes]
rs1982496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2253090	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs2445098	0.87[EUR][1000 genomes]
rs2445099	0.87[EUR][1000 genomes]
rs2462424	0.84[EUR][1000 genomes]
rs2465779	0.81[EUR][1000 genomes]
rs2465782	0.95[ASN][1000 genomes]
rs2510596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2510598	0.81[EUR][1000 genomes]
rs2510599	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2510600	0.81[EUR][1000 genomes]
rs2510601	0.87[EUR][1000 genomes]
rs2513106	0.80[EUR][1000 genomes]
rs2513108	0.87[EUR][1000 genomes]
rs2513109	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2513138	0.84[EUR][1000 genomes]
rs3100765	0.96[ASN][1000 genomes]
rs66521669	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7109634	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7110185	0.80[EUR][1000 genomes]
rs7116468	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7127697	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938459	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106855000-106868400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:106861200-106869400	Weak transcription	NHLF	lung
3	chr11:106861400-106866400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:106861600-106866800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:106861600-106866800	Weak transcription	Fetal Brain Female	brain
6	chr11:106861600-106868000	Weak transcription	Fetal Heart	heart
7	chr11:106861600-106886200	Weak transcription	Fetal Brain Male	brain
8	chr11:106862200-106868800	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:106862800-106866800	Weak transcription	Fetal Lung	lung

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