Variant report

Variant	rs11211988
Chromosome Location	chr11:106831943-106831944
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11211986	0.86[ASN][1000 genomes]
rs11211991	0.97[ASN][1000 genomes]
rs1455600	0.84[ASN][1000 genomes]
rs17574208	0.84[ASN][1000 genomes]
rs1982496	0.83[ASN][1000 genomes]
rs2510596	0.83[ASN][1000 genomes]
rs2510599	0.83[ASN][1000 genomes]
rs2513109	0.81[ASN][1000 genomes]
rs2513142	0.83[ASN][1000 genomes]
rs66521669	0.84[ASN][1000 genomes]
rs7109634	0.97[ASN][1000 genomes]
rs7116468	0.92[ASN][1000 genomes]
rs7127697	0.84[ASN][1000 genomes]
rs7938459	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1806517	chr11:106828741-106831970	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106825400-106836200	Weak transcription	Fetal Brain Male	brain
2	chr11:106827200-106832600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr11:106827400-106832200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:106827400-106832400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:106827400-106832800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:106828400-106832400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:106828400-106832600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:106828400-106840200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:106828600-106833000	Enhancers	Fetal Lung	lung
11	chr11:106829400-106832600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:106829600-106832000	Enhancers	NHLF	lung
13	chr11:106829600-106833000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:106830000-106832600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:106830200-106832600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:106830200-106832800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:106830400-106832600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr11:106830400-106833400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr11:106830400-106841400	Enhancers	Fetal Heart	heart
20	chr11:106830600-106832200	Enhancers	HSMMtube	muscle
21	chr11:106830600-106832600	Enhancers	Fetal Kidney	kidney
22	chr11:106830800-106833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:106831000-106832800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr11:106831200-106832600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr11:106831400-106832000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr11:106831400-106832000	Enhancers	Ovary	ovary
28	chr11:106831400-106832600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:106831400-106832800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:106831400-106832800	Enhancers	NH-A	brain
31	chr11:106831400-106833000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr11:106831400-106833200	Enhancers	NHDF-Ad	bronchial
33	chr11:106831600-106832000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:106831600-106832000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:106831600-106832000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:106831600-106832400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:106831600-106832600	Active TSS	A549	lung
38	chr11:106831600-106833000	Enhancers	HSMM	muscle
39	chr11:106831800-106832000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:106831800-106832000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:106831800-106832000	Enhancers	Brain Anterior Caudate	brain
42	chr11:106831800-106832000	Enhancers	Gastric	stomach
43	chr11:106831800-106832000	Enhancers	Left Ventricle	heart
44	chr11:106831800-106832000	Enhancers	Pancreas	Pancrea
45	chr11:106831800-106832400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:106831800-106833200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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