Variant report

Variant	rs7116468
Chromosome Location	chr11:106828245-106828246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11211974	0.82[EUR][1000 genomes]
rs11211976	0.81[EUR][1000 genomes]
rs11211977	0.81[EUR][1000 genomes]
rs11211979	0.82[EUR][1000 genomes]
rs11211980	0.85[EUR][1000 genomes]
rs11211982	0.85[EUR][1000 genomes]
rs11211983	0.85[EUR][1000 genomes]
rs11211986	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11211988	0.92[ASN][1000 genomes]
rs11211991	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1455600	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17574208	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1944208	0.84[EUR][1000 genomes]
rs1944211	0.85[EUR][1000 genomes]
rs1982496	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2226874	0.81[EUR][1000 genomes]
rs2445098	0.80[EUR][1000 genomes]
rs2445099	0.81[EUR][1000 genomes]
rs2510596	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2510598	0.80[EUR][1000 genomes]
rs2510599	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2510601	0.81[EUR][1000 genomes]
rs2513108	0.81[EUR][1000 genomes]
rs2513109	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2513138	0.84[EUR][1000 genomes]
rs2513142	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4523665	0.82[EUR][1000 genomes]
rs4620686	0.82[EUR][1000 genomes]
rs66521669	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7109634	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127697	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72990356	0.82[EUR][1000 genomes]
rs7938459	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1818906	chr11:106786428-106831384	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106809000-106830400	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:106822000-106829600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:106825400-106836200	Weak transcription	Fetal Brain Male	brain
4	chr11:106827000-106828600	Enhancers	Dnd41	blood
5	chr11:106827200-106828400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:106827200-106828600	Weak transcription	Fetal Lung	lung
7	chr11:106827200-106832600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:106827400-106828400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:106827400-106828400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr11:106827400-106828400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:106827400-106832200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:106827400-106832400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:106827400-106832800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:106827600-106828400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:106827600-106828400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr11:106827600-106828400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr11:106827600-106828400	Enhancers	Fetal Muscle Trunk	muscle
18	chr11:106827600-106829600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:106827800-106828400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:106827800-106830200	Enhancers	Fetal Heart	heart
21	chr11:106828000-106828400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr11:106828000-106828400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:106828200-106828400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr11:106828200-106828600	Weak transcription	Placenta	Placenta
25	chr11:106828200-106830200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:106828200-106830400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:106828200-106831800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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