Variant report

Variant	rs2510598
Chromosome Location	chr11:106854887-106854888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:106849761..106852170-chr11:106854048..106856543,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11211991	0.81[EUR][1000 genomes]
rs1455600	0.82[EUR][1000 genomes]
rs1982496	0.83[EUR][1000 genomes]
rs2445098	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2445099	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465779	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465780	0.97[ASN][1000 genomes]
rs2510595	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2510596	0.86[EUR][1000 genomes]
rs2510597	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2510599	0.89[EUR][1000 genomes]
rs2510600	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2510601	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2513106	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2513108	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2513109	0.82[EUR][1000 genomes]
rs2513137	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2513138	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2513142	0.81[EUR][1000 genomes]
rs3133355	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66521669	0.83[EUR][1000 genomes]
rs7109634	0.80[EUR][1000 genomes]
rs7110185	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116468	0.80[EUR][1000 genomes]
rs7127697	0.83[EUR][1000 genomes]
rs7932141	0.97[ASN][1000 genomes]
rs7938459	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:106850800-106858600	Weak transcription	Fetal Stomach	stomach
4	chr11:106851200-106858800	Weak transcription	Ovary	ovary
5	chr11:106851200-106859400	Weak transcription	Pancreas	Pancrea
6	chr11:106851400-106855200	Enhancers	Fetal Lung	lung
7	chr11:106853200-106855800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:106853400-106855200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:106853600-106855000	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:106853800-106855000	Enhancers	Fetal Brain Male	brain
11	chr11:106853800-106855000	Enhancers	Fetal Brain Female	brain
12	chr11:106853800-106855200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:106853800-106855200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:106854000-106857600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:106854200-106855000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:106854200-106855000	Enhancers	Brain Angular Gyrus	brain
17	chr11:106854400-106859400	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:106854600-106855000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:106854600-106855000	Enhancers	Brain Germinal Matrix	brain
20	chr11:106854600-106855000	Enhancers	NHLF	lung

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