Variant report

Variant	rs2510601
Chromosome Location	chr11:106861979-106861980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11211991	0.82[EUR][1000 genomes]
rs1455600	0.83[EUR][1000 genomes]
rs1982496	0.89[EUR][1000 genomes]
rs2445098	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2445099	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465779	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465780	0.97[ASN][1000 genomes]
rs2510595	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2510596	0.87[EUR][1000 genomes]
rs2510597	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2510598	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2510599	0.83[EUR][1000 genomes]
rs2510600	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2513106	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2513108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2513109	0.89[EUR][1000 genomes]
rs2513137	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2513138	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2513142	0.87[EUR][1000 genomes]
rs3133355	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66521669	0.84[EUR][1000 genomes]
rs7109634	0.81[EUR][1000 genomes]
rs7110185	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116468	0.81[EUR][1000 genomes]
rs7127697	0.84[EUR][1000 genomes]
rs7932141	0.96[ASN][1000 genomes]
rs7938459	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106855000-106868400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:106860800-106862200	Enhancers	Fetal Muscle Leg	muscle
3	chr11:106861000-106862000	Enhancers	Fetal Muscle Trunk	muscle
4	chr11:106861200-106869400	Weak transcription	NHLF	lung
5	chr11:106861400-106862200	Weak transcription	NHDF-Ad	bronchial
6	chr11:106861400-106862800	Enhancers	Fetal Lung	lung
7	chr11:106861400-106866400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:106861600-106866800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:106861600-106866800	Weak transcription	Fetal Brain Female	brain
10	chr11:106861600-106868000	Weak transcription	Fetal Heart	heart
11	chr11:106861600-106886200	Weak transcription	Fetal Brain Male	brain

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