Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11211986	0.84[EUR][1000 genomes]
rs11211988	0.84[ASN][1000 genomes]
rs11211991	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17574208	0.84[EUR][1000 genomes]
rs1982496	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2253090	0.84[CEU][hapmap];0.87[JPT][hapmap]
rs2445098	0.82[EUR][1000 genomes]
rs2445099	0.83[EUR][1000 genomes]
rs2465782	0.93[ASN][1000 genomes]
rs2510596	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2510598	0.82[EUR][1000 genomes]
rs2510599	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2510601	0.83[EUR][1000 genomes]
rs2513108	0.83[EUR][1000 genomes]
rs2513109	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2513138	0.86[EUR][1000 genomes]
rs2513142	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3100765	0.94[ASN][1000 genomes]
rs66521669	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109634	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7116468	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7127697	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938459	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106830400-106841400	Enhancers	Fetal Heart	heart
3	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:106832000-106851000	Weak transcription	Pancreas	Pancrea
5	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:106838200-106842600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:106838200-106844200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:106839600-106841200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:106839600-106841200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:106840600-106853600	Weak transcription	Brain Anterior Caudate	brain
11	chr11:106840800-106841200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:106840800-106845400	Weak transcription	Brain Angular Gyrus	brain
13	chr11:106840800-106845600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:106840800-106846200	Weak transcription	Ovary	ovary
15	chr11:106841000-106844000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:106841000-106844200	Weak transcription	Fetal Lung	lung
17	chr11:106841000-106847400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:106841000-106848400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: