Variant report

Variant	rs1982496
Chromosome Location	chr11:106857661-106857662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11211986	0.87[EUR][1000 genomes]
rs11211988	0.83[ASN][1000 genomes]
rs11211991	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1455600	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17574208	0.87[EUR][1000 genomes]
rs2253090	0.94[CEU][hapmap];0.87[JPT][hapmap]
rs2445098	0.89[EUR][1000 genomes]
rs2445099	0.89[EUR][1000 genomes]
rs2462424	0.82[EUR][1000 genomes]
rs2465779	0.83[EUR][1000 genomes]
rs2465782	0.94[ASN][1000 genomes]
rs2510596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510597	0.81[EUR][1000 genomes]
rs2510598	0.83[EUR][1000 genomes]
rs2510599	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2510600	0.83[EUR][1000 genomes]
rs2510601	0.89[EUR][1000 genomes]
rs2513106	0.82[EUR][1000 genomes]
rs2513108	0.89[EUR][1000 genomes]
rs2513109	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2513137	0.81[EUR][1000 genomes]
rs2513138	0.87[EUR][1000 genomes]
rs2513142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3100765	0.95[ASN][1000 genomes]
rs66521669	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7109634	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7110185	0.82[EUR][1000 genomes]
rs7116468	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7127697	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7938459	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:106850800-106858600	Weak transcription	Fetal Stomach	stomach
3	chr11:106851200-106858800	Weak transcription	Ovary	ovary
4	chr11:106851200-106859400	Weak transcription	Pancreas	Pancrea
5	chr11:106854400-106859400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:106855000-106859600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:106855000-106861000	Weak transcription	Fetal Brain Male	brain
8	chr11:106855000-106868400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:106855200-106858600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:106855800-106858800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:106856200-106859400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:106856200-106860000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:106856400-106861400	Enhancers	NHDF-Ad	bronchial
14	chr11:106856800-106858800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:106857000-106860000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:106857200-106858400	Weak transcription	NHLF	lung
17	chr11:106857200-106858600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:106857400-106858200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:106857400-106858200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:106857400-106858200	Enhancers	Placenta	Placenta
21	chr11:106857400-106858400	Enhancers	Fetal Muscle Trunk	muscle
22	chr11:106857600-106858400	Enhancers	Fetal Lung	lung
23	chr11:106857600-106861600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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