Variant report

Variant	rs2510596
Chromosome Location	chr11:106851522-106851523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:106849761..106852170-chr11:106854048..106856543,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11211986	0.88[EUR][1000 genomes]
rs11211988	0.83[ASN][1000 genomes]
rs11211991	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1455600	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17574208	0.88[EUR][1000 genomes]
rs1982496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2253090	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs2445098	0.86[EUR][1000 genomes]
rs2445099	0.87[EUR][1000 genomes]
rs2462424	0.82[EUR][1000 genomes]
rs2465779	0.81[EUR][1000 genomes]
rs2465782	0.94[ASN][1000 genomes]
rs2510597	0.83[EUR][1000 genomes]
rs2510598	0.86[EUR][1000 genomes]
rs2510599	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2510600	0.81[EUR][1000 genomes]
rs2510601	0.87[EUR][1000 genomes]
rs2513108	0.87[EUR][1000 genomes]
rs2513109	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2513137	0.83[EUR][1000 genomes]
rs2513138	0.89[EUR][1000 genomes]
rs2513142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3100765	0.95[ASN][1000 genomes]
rs3133355	0.82[EUR][1000 genomes]
rs66521669	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7109634	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7116468	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7127697	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7938459	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2510596	FDX1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:106840600-106853600	Weak transcription	Brain Anterior Caudate	brain
5	chr11:106845600-106853600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:106848600-106854000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:106850600-106851600	Enhancers	Fetal Heart	heart
8	chr11:106850800-106858600	Weak transcription	Fetal Stomach	stomach
9	chr11:106851000-106853200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:106851200-106858800	Weak transcription	Ovary	ovary
11	chr11:106851200-106859400	Weak transcription	Pancreas	Pancrea
12	chr11:106851400-106851600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:106851400-106855200	Enhancers	Fetal Lung	lung

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