Variant report

Variant	rs3100765
Chromosome Location	chr11:106868362-106868363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11211991	0.82[ASN][1000 genomes]
rs1455600	0.94[ASN][1000 genomes]
rs1982496	0.95[ASN][1000 genomes]
rs2253090	0.87[JPT][hapmap]
rs2462422	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2465780	0.86[EUR][1000 genomes]
rs2465782	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2510595	0.90[EUR][1000 genomes]
rs2510596	0.95[ASN][1000 genomes]
rs2510599	0.94[ASN][1000 genomes]
rs2513109	0.94[ASN][1000 genomes]
rs2513142	0.96[ASN][1000 genomes]
rs66521669	0.94[ASN][1000 genomes]
rs7109634	0.82[ASN][1000 genomes]
rs7127697	0.94[ASN][1000 genomes]
rs7938459	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106855000-106868400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:106861200-106869400	Weak transcription	NHLF	lung
3	chr11:106861600-106886200	Weak transcription	Fetal Brain Male	brain
4	chr11:106862200-106868800	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:106866800-106869000	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:106866800-106869000	Enhancers	Fetal Lung	lung
7	chr11:106866800-106869400	Enhancers	Brain Hippocampus Middle	brain
8	chr11:106866800-106870600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:106867200-106868600	Enhancers	Brain Anterior Caudate	brain
10	chr11:106867400-106870000	Enhancers	NHDF-Ad	bronchial
11	chr11:106868000-106869400	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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