Variant report

Variant	rs2470718
Chromosome Location	chr8:95359077-95359078
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10109060	0.86[EUR][1000 genomes]
rs1023766	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1379246	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1580498	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1598713	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1813167	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866845	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2046665	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2046666	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2099788	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2119460	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2246066	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2256744	0.85[AFR][1000 genomes]
rs2291439	0.80[CEU][hapmap]
rs2445699	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2445721	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2445728	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2450554	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2450556	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2450558	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2450572	0.89[CEU][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2450578	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2450580	1.00[CEU][hapmap]
rs2470728	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470731	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470732	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470735	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2470739	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470740	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470742	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2470746	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515098	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515099	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2515131	0.85[AFR][1000 genomes]
rs2515153	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2515154	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2515155	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2515156	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515157	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2515161	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2919654	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2919663	0.81[ASN][1000 genomes]
rs2919665	0.81[ASN][1000 genomes]
rs2919666	0.81[ASN][1000 genomes]
rs2921385	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs2921387	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs2921388	0.82[ASN][1000 genomes]
rs2930959	0.81[ASN][1000 genomes]
rs2930967	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2930969	1.00[CHB][hapmap]
rs3098703	0.80[ASN][1000 genomes]
rs3098718	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3098725	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3099398	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs3099407	1.00[CHB][hapmap]
rs3099412	1.00[CHB][hapmap]
rs3102841	1.00[CHB][hapmap]
rs3133648	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4735288	0.86[EUR][1000 genomes]
rs67639046	0.85[EUR][1000 genomes]
rs6997115	0.86[EUR][1000 genomes]
rs71504369	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7824722	0.82[EUR][1000 genomes]
rs7831073	0.85[EUR][1000 genomes]
rs935052	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs957446	1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95355800-95365200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:95355800-95365400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:95358600-95359800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:95358800-95359200	Enhancers	Duodenum Mucosa	Duodenum
5	chr8:95358800-95359400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:95358800-95359400	Enhancers	Fetal Intestine Small	intestine
7	chr8:95358800-95359400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr8:95358800-95359600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:95358800-95359600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:95358800-95359600	Enhancers	Fetal Intestine Large	intestine
11	chr8:95359000-95359200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:95359000-95359200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:95359000-95359400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr8:95359000-95359400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:95359000-95359400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr8:95359000-95359600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:95359000-95359800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:95359000-95359800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links