Variant report

Variant	rs2515161
Chromosome Location	chr8:95370918-95370919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95369732..95371787-chr8:95374692..95376567,2	MCF-7	breast:
2	chr8:95322441..95324940-chr8:95370340..95371975,2	MCF-7	breast:
3	chr8:95370171..95372386-chr8:95374726..95376364,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10109060	0.86[EUR][1000 genomes]
rs1023766	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1379246	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580498	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1598713	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs1813167	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866845	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2046665	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2046666	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2099788	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2119460	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2246066	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2256748	0.83[AFR][1000 genomes]
rs2291439	0.80[CEU][hapmap]
rs2445699	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2445700	0.81[AFR][1000 genomes]
rs2445703	0.87[AFR][1000 genomes]
rs2445721	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2445728	0.90[EUR][1000 genomes]
rs2445729	0.83[AFR][1000 genomes]
rs2445730	0.83[AFR][1000 genomes]
rs2445731	0.83[AFR][1000 genomes]
rs2448919	0.83[AFR][1000 genomes]
rs2450554	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2450556	0.90[EUR][1000 genomes]
rs2450558	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2450572	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2450578	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2450580	1.00[CEU][hapmap]
rs2470714	0.83[AFR][1000 genomes]
rs2470715	0.83[AFR][1000 genomes]
rs2470716	0.83[AFR][1000 genomes]
rs2470718	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2470728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470731	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470732	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470735	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2470739	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2470740	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2470742	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2470746	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2515098	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515099	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2515100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515123	0.82[AFR][1000 genomes]
rs2515124	0.83[AFR][1000 genomes]
rs2515153	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2515154	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2515155	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515156	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515157	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2515165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2515167	0.87[AFR][1000 genomes]
rs2919654	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2919663	0.83[ASN][1000 genomes]
rs2919665	0.83[ASN][1000 genomes]
rs2919666	0.83[ASN][1000 genomes]
rs2921385	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs2921387	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs2921388	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2930959	0.83[ASN][1000 genomes]
rs2930967	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2930969	1.00[CHB][hapmap]
rs3098703	0.82[ASN][1000 genomes]
rs3098708	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3098712	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3098718	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3098725	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3099398	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs3099401	0.81[ASN][1000 genomes]
rs3099407	1.00[CHB][hapmap]
rs3099412	1.00[CHB][hapmap]
rs3102841	1.00[CHB][hapmap]
rs3102874	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3133648	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3133651	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3133654	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3133656	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3133657	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3133658	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4735288	0.86[EUR][1000 genomes]
rs67639046	0.85[EUR][1000 genomes]
rs6997115	0.86[EUR][1000 genomes]
rs71504369	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7824722	0.82[EUR][1000 genomes]
rs7831073	0.85[EUR][1000 genomes]
rs935052	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs957446	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs981616	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95363000-95385200	Weak transcription	Primary T cells from cord blood	blood
2	chr8:95365800-95378800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:95365800-95385000	Weak transcription	NHEK	skin
4	chr8:95365800-95417200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:95366000-95372400	Weak transcription	Fetal Intestine Small	intestine
6	chr8:95366000-95375600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:95369400-95383600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:95370000-95371200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:95370000-95371400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:95370000-95371400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:95370000-95371600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:95370000-95371600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:95370000-95371600	Weak transcription	Brain Germinal Matrix	brain
14	chr8:95370000-95371800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:95370000-95371800	Weak transcription	NHDF-Ad	bronchial
16	chr8:95370000-95372200	Weak transcription	Fetal Intestine Large	intestine
17	chr8:95370000-95379000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:95370000-95380600	Weak transcription	A549	lung
19	chr8:95370000-95382200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:95370000-95385000	Weak transcription	NHLF	lung
21	chr8:95370000-95385200	Weak transcription	HSMM	muscle
22	chr8:95370000-95385200	Weak transcription	HUVEC	blood vessel
23	chr8:95370200-95371600	Weak transcription	Osteobl	bone
24	chr8:95370200-95372600	Weak transcription	Fetal Heart	heart
25	chr8:95370200-95378800	Weak transcription	NH-A	brain
26	chr8:95370200-95379000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr8:95370200-95384800	Weak transcription	HMEC	breast
28	chr8:95370400-95378800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:95370600-95371800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:95370600-95381800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr8:95370600-95385400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr8:95370800-95383400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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