Variant report

Variant	rs2473453
Chromosome Location	chr6:143738570-143738571
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143730112..143731912-chr6:143738511..143740058,2	K562	blood:
2	chr6:143738518..143740426-chr6:143740764..143742768,2	K562	blood:
3	chr6:143737366..143741274-chr6:143742822..143747466,4	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1138410	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12215708	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12215709	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072606	1.00[ASN][1000 genomes]
rs2432871	0.81[AMR][1000 genomes]
rs2432872	0.84[AMR][1000 genomes]
rs2432873	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473454	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496586	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2496587	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2496588	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2496591	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496594	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496595	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2496596	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2496597	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4605902	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55865962	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56336947	1.00[ASN][1000 genomes]
rs6570561	1.00[ASN][1000 genomes]
rs6915676	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915856	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921292	1.00[ASN][1000 genomes]
rs6921520	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921706	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988621	1.00[ASN][1000 genomes]
rs72988635	1.00[ASN][1000 genomes]
rs7740441	1.00[ASN][1000 genomes]
rs7744361	1.00[ASN][1000 genomes]
rs7755370	1.00[ASN][1000 genomes]
rs7761741	1.00[ASN][1000 genomes]
rs9321907	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9321908	1.00[ASN][1000 genomes]
rs9321909	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9321910	1.00[ASN][1000 genomes]
rs9321911	1.00[ASN][1000 genomes]
rs9321912	1.00[ASN][1000 genomes]
rs9484744	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484745	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9484746	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9484747	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9484748	1.00[ASN][1000 genomes]
rs9484749	1.00[ASN][1000 genomes]
rs9484750	1.00[ASN][1000 genomes]
rs9484752	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496616	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496617	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496618	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496619	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496620	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496621	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496622	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496624	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496625	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496627	1.00[ASN][1000 genomes]
rs9496629	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496630	1.00[ASN][1000 genomes]
rs9496631	1.00[ASN][1000 genomes]
rs9496632	1.00[ASN][1000 genomes]
rs9496633	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496634	1.00[ASN][1000 genomes]
rs9496635	1.00[ASN][1000 genomes]
rs9496636	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496637	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496639	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496640	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496642	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496643	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2473453	ADAT2	cis	Esophagus Muscularis	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143706600-143757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143719200-143753200	Weak transcription	Aorta	Aorta
3	chr6:143724200-143748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:143726800-143765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:143727600-143753200	Weak transcription	Ovary	ovary
6	chr6:143731800-143743400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:143731800-143747400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:143732600-143751000	Weak transcription	Fetal Intestine Small	intestine
9	chr6:143732600-143753200	Weak transcription	Hela-S3	cervix
10	chr6:143733200-143770400	Weak transcription	A549	lung
11	chr6:143733600-143747400	Weak transcription	K562	blood
12	chr6:143734800-143743400	Weak transcription	NHEK	skin
13	chr6:143735000-143743000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:143735000-143750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:143735200-143743600	Weak transcription	HMEC	breast
16	chr6:143735600-143738600	Weak transcription	HepG2	liver
17	chr6:143737200-143749200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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