Variant report

Variant	rs2496587
Chromosome Location	chr6:143732342-143732343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143729967..143734343-chr6:143743394..143748641,6	K562	blood:
2	chr6:143591577..143593463-chr6:143730935..143732577,2	K562	blood:
3	chr6:143729967..143733929-chr6:143743394..143746871,5	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1138410	1.00[CEU][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12215708	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12215709	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17072606	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2432871	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2432872	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2432873	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2473453	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2473454	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2496586	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2496588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2496589	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2496591	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2496594	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2496595	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2496596	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2496597	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3748071	1.00[JPT][hapmap]
rs4605902	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55865962	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56336947	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6570561	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6915676	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6915856	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6921292	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6921520	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6921706	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72988621	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72988635	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7740441	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7744361	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7755370	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7761741	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9321907	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9321908	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9321909	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9321910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9321911	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9321912	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9484744	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9484745	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9484746	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9484747	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9484748	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9484749	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9484750	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9484752	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9484753	1.00[JPT][hapmap]
rs9496616	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9496617	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496618	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9496619	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9496620	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496621	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496622	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9496627	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9496628	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9496629	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9496630	0.83[EUR][1000 genomes]
rs9496631	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496632	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496633	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496634	0.96[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496635	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9496636	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496637	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9496639	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9496640	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9496642	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496643	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9496644	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2496587	ADAT2	cis	Esophagus Muscularis	GTEx

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143706600-143757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143719200-143753200	Weak transcription	Aorta	Aorta
3	chr6:143724200-143748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:143726600-143735000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:143726800-143765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:143727600-143753200	Weak transcription	Ovary	ovary
7	chr6:143728200-143735000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:143728800-143733000	Enhancers	NHEK	skin
9	chr6:143729800-143733200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:143729800-143735600	Enhancers	HepG2	liver
11	chr6:143730400-143733200	Enhancers	HMEC	breast
12	chr6:143730800-143732600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:143731400-143733200	Enhancers	Osteobl	bone
14	chr6:143731600-143732400	Enhancers	Liver	Liver
15	chr6:143731600-143732600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:143731600-143732600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:143731600-143732600	Enhancers	Fetal Intestine Small	intestine
18	chr6:143731600-143732600	Enhancers	Hela-S3	cervix
19	chr6:143731600-143732800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:143731600-143732800	Enhancers	Fetal Intestine Large	intestine
21	chr6:143731600-143733400	Enhancers	NH-A	brain
22	chr6:143731800-143732600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:143731800-143732800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:143731800-143733200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:143731800-143743400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:143731800-143747400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:143732000-143732400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:143732200-143732600	Flanking Active TSS	A549	lung
29	chr6:143732200-143736600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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